c(1,3,5,7,9) < 5
#> [1] TRUE TRUE FALSE FALSE FALSE
Jose Toledo Luna
July 21, 2024
There are only two logical values, TRUE
and FALSE
. In R, we can abbreviate TRUE
with T
and FALSE
with F
. They can be interpreted as any option corresponding to a binary choice. For example, yes/no, do/don’t, satisfied/not satisfied or even 1/0
.
A basic way to define a logical statement is using a relational operator to compare two expressions. For example, we may ask ourselves “is x less than a certain number ?” or using a real world example from the mtcars
dataset “how many cars have more than 18 miles per gallon?”
The table below summarizes some of the relational operators available in R:
Operator | Interpretation | Basic Example | Result |
---|---|---|---|
== | Equal to | 5 == 5 | TRUE |
!= | Not equal to | 4 != 5 | TRUE |
> | Greater than | 4 > 5 | FALSE |
< | Less than | 4 < 5 | TRUE |
<= | Less than or equal to | 4 <= 5 | TRUE |
>= | Greater than or equal to | 4 >= 5 | FALSE |
From the table above we consider single numbers as our two expression to compare, but we can extend this idea to vectors, data.frames, matrices of various data types. When applying relational operators to vectors it is important to know they are being compared element-wise.
We first start off by comparing a vector with a single number
Interpretation: Is 1 less than 5? is 3 less than 5? is 5 less than 5? is 7 less than 5? is 9 less than 5?
The output from the above example is a logical
vector
with TRUE/FALSE
if the given condition was satisfied or not. What if we were given the question “How many values of x are smaller than some number?”
we can then apply the sum()
function to count how many TRUE
were in our logical vector. This will be very useful when we have very large vectors and we can’t count how many TRUE
were in our vector manually.
Below are some examples applying relational operators to compare two vectors of the same length
Interpretation: Is 1 less than 5? is 2 less than 4? is 3 less than 3? is 4 less than 2?
Interpretation: Is 1 less than or equal to 5? is 2 less than or equal to 4? is 3 less than or equal to 3? is 4 less than or equal to 2?
Another topic to consider is comparing two strings. While this can be a more advance topic we only consider the simplest scenario in which we compare case-sensitive strings.
while the above strings contain the same characters in the same order, if we compare them directly they will be considered different
Interpretation: are string1 and string2 identical?
However, if were are interested in seeing if they contain the same characters regardless of the case sensitivity, we can use tolower()
function as follows
tolower()
will convert any upper-case character in a vector into lower-case character.
Since all the characters are now lower-case, and both strings contain the same characters in the same order then they are now identical.
For more advanced examples in comparing strings check out the following blog post (Optional)
In practice, we often need to use multiple conditions to make certain decisions. For example, you have a personal rule that if there is no homework AND you don’t have class, then you will go out with your friends. Now, explore what happens to this rule when OR is used instead of AND, also what happens when negation (NOT ) is added to one or both clauses.
The table below summarizes some of these logical operators
Operator | Interpretation | Basic Example | Result |
---|---|---|---|
! | NOT If the condition is true, logical NOT operator returns as false |
! (5 == 5) | FALSE |
& | AND (element-wise) Returns true when both conditions are true |
TRUE TRUE FALSE FALSE |
|
&& | AND (single comparison) Same as above but for single comparison |
(same as & above) |
(same as & above) |
| | OR (element-wise) Returns true when at-least one of conditions is true |
TRUE TRUE FALSE FALSE |
|
|| | OR (single comparison) Same as above but for single comparison |
(same as | above) |
(same as | above) |
The difference between element-wise and single comparison can be seen in the examples below
Interpretation: TRUE or FALSE, TRUE or FALSE, FALSE or TRUE, FALSE or FALSE
Element-wise will return a vector of logical values, one for each pair of logicals combined. Whereas, single comparison only compares the first two elements of the logical vectors and will return a single logical value
Interpretation: Is age 18 OR less than or equal to 21 ?
Interpretation: Is age greater than AND less than 30?
Consider a more complicated example of holding office in the United States. The president must be a natural-born citizen of the United States, be at least 35 years old, and have been a resident of the United States for 14 years
We have a candidate who is 40 years old, was born in the United States but for some reason they have only been a resident of the United States for 10 years. Clearly, this candidate is not eligible to become our next president. We demonstrate this using logical operators
Interpretation: Is the candidate at least 35 years old?
Interpretation: Is the candidate born in United States?
Interpretation: Has the candidate been a resident for at least 14 years?
Putting all of the above together,
#> [1] FALSE
Interpretation: TRUE AND TRUE AND FALSE
Since one of the conditions fails the entire statement will be false.
Now that we have an idea of how to construct logical statements, we can apply them to subset our data based on a given condition
Consider the following vector dat
with 18 values
We will subset dat
based on the following conditions:
1. How many values are bigger than 10?
#> [1] TRUE TRUE TRUE FALSE FALSE TRUE FALSE FALSE FALSE TRUE FALSE TRUE
#> [13] FALSE TRUE TRUE TRUE TRUE TRUE
#> [1] 11
while knowing how many values are bigger than 10 is useful, we may only want to keep those values and not the ones that are smaller than 10.
2. Keep the values that are bigger than 10?
If given a vector, the way to subset it based on a condition is as follows:
vector[ condtion ]
. Our condition is all the values that are bigger than 10, that is dat > 10
3. How many values are exactly 11 ?
Our condition is dat == 11
,this should only return two TRUE
, and after using the sum()
function to count them we obtain
If we wanted to extract these values from dat
we would run
Next we use the birth
dataset for the following examples
4. How many females were in this dataset?
First we extract the values from the Gender
column and store them in a variable called gender_vec
Recall strings are case-sensitive, so you must spell ‘Female’ exactly as it appears above
Then we subset this vector to only include females
Now our vector only contains females, we can use length()
to count how many females were in this dataset
An easier approach would be to simply create the variable gender_vec
and count how many females are in that vector
Considering example 4 in the vectors section of subsetting, we are extracting solely the values from a specific column based on a given condition. However, in some scenarios we may want to preserve all other information (columns) from our dataset after subsetting our data.
Data frames have the following structure data[rows,columns]
. The first argument inside the brackets will specify the rows and the second argument will specify the columns. We can apply all of the subsetting techniques we covered in the vectors within the rows, columns, or both rows and columns data[condition for rows, condition for columns]
For example, if we wanted to subset the births
dataset to only include females
Interpretation: Subset the rows to only include females, keep all the other columns
#> X Gender Premie weight Apgar1 Fage Mage Feduc Meduc TotPreg Visits
#> 5 5 Female No 119 8 30 19 12 12 2 12
#> 9 9 Female No 126 7 31 31 12 12 2 8
#> 10 10 Female No 131 8 29 28 9 9 3 9
#> Marital Racemom Racedad Hispmom Hispdad Gained Habit MomPriorCond
#> 5 Unmarried Black Unknown NotHisp Unknown 20 NonSmoker None
#> 9 Married White White Mexican Mexican 30 NonSmoker None
#> 10 Married White White Mexican Mexican 33 NonSmoker None
#> BirthDef DelivComp BirthComp
#> 5 None None None
#> 9 None None None
#> 10 None None None
You will notice that we only applied a condition to the rows argument and not the columns argument. In the case where one of the arguments is left blank, then no condition will be applied to the respective argument.
For practice, consider the following examples
1. Create a new data frame containing the columns: Gender, weight, and Habit
We can use colnames()
#> [1] "X" "Gender" "Premie" "weight" "Apgar1"
#> [6] "Fage" "Mage" "Feduc" "Meduc" "TotPreg"
#> [11] "Visits" "Marital" "Racemom" "Racedad" "Hispmom"
#> [16] "Hispdad" "Gained" "Habit" "MomPriorCond" "BirthDef"
#> [21] "DelivComp" "BirthComp"
to make sure we have the correct spelling of the appropriate columns we want to keep.
Interpretation: Keep all the rows, but only keep the columns: Gender, weight, and Habit
#> Gender weight Habit
#> 1 Male 116 NonSmoker
#> 2 Male 126 Smoker
#> 3 Male 161 NonSmoker
We created a character vector with the names of the columns we wanted to keep and used it as the condition in the columns argument.
2. Split birth_dat
into two parts: One for which the individual was a smoker and another for which they were not a smoker
The variable Habit
contains information on whether or not the individual was a smoker.
First we create a logical vector to determine if the individual was a smoker
Interpretation: Return TRUE if Habit is smoker, otherwise FALSE
We use the negation logical operator to obtain all the non-smokers from our logical vector is_smoker
without having to create a new variable
To subset our data into keeping only the smokers we input our logical vector is_smoker
into the rows argument
Interpretation: Only keep the rows in which the individual is a smoker
#> X Gender Premie weight Apgar1 Fage Mage Feduc Meduc TotPreg Visits
#> 2 2 Male No 126 8 30 18 12 12 1 14
#> 16 16 Female Yes 78 8 35 26 14 15 2 9
#> 19 19 Male No 121 9 25 24 10 10 4 11
#> Marital Racemom Racedad Hispmom Hispdad Gained Habit MomPriorCond
#> 2 Unmarried White Unknown NotHisp Unknown 50 Smoker At Least One
#> 16 Married White White NotHisp NotHisp 25 Smoker None
#> 19 Unmarried White White NotHisp NotHisp 50 Smoker None
#> BirthDef DelivComp BirthComp
#> 2 None None None
#> 16 None At Least One None
#> 19 None None None
To subset our data into keeping only the non-smokers we input our logical vector !is_smoker
into the rows argument
Interpretation: Only keep the rows in which the individual is NOT a smoker
#> X Gender Premie weight Apgar1 Fage Mage Feduc Meduc TotPreg Visits Marital
#> 1 1 Male No 116 9 28 34 6 3 2 10 Married
#> 3 3 Male No 161 8 28 29 12 12 3 14 Married
#> 4 4 Male No 133 9 26 23 8 9 3 10 Married
#> Racemom Racedad Hispmom Hispdad Gained Habit MomPriorCond BirthDef
#> 1 White White Mexican Mexican 30 NonSmoker None None
#> 3 White White OtherHisp OtherHisp 65 NonSmoker None None
#> 4 White White Mexican Mexican 8 NonSmoker None None
#> DelivComp BirthComp
#> 1 None None
#> 3 At Least One None
#> 4 At Least One None
3. What is the average weight of babies with at least one birth defect?
The variable BirthDef
determines if the baby had no birth defects or had at least one defect
Create a logical vector to determine if the baby had at least one defect
We must spell “At Least One” with correct upper/lower cases including spaces
Subset our data to include rows with babies with at least one defect, then select only the weight
column. Lastly compute the mean.
Interpretation: Average weight of babies with at least one birth defect
Missing data (or missing values) appear when no value is available in one or more variables of an observation. A common example can look something like this
StudentID | Major | GPA |
---|---|---|
12345 | math | 3.8 |
23456 | NA | 3.2 |
23405 | biology | NA |
where we do not know the major of the second student and we also do not know the major from the third student (denoted by NA
)
Identifying the rows and columns where missing values occur is necessary before addressing the issue of missingness. Although it is easy to observe in the example mentioned above, in most cases, dealing with larger datasets requires a more programmatic approach
In R, NA
stands for “Not Available” and is used to represent missing values in a dataset. NA
can be used for any data type in R, such as numeric character, or logical.
The type of NA
is a logical value
and can be coerced into any other data type. For example, consider the following numeric vector
but now with a missing value as the third element, it will preserve the original data type
or even a character vector
In the following, we will show several examples how to find missing values. The most common approach is to use the function is.na()
Interpretation: For each element does this element contain NA
which will return a logical vector of the same length as the input vector, TRUE
in the position which NA
is located in. We can use the function which()
in order to find out the actual position of TRUE
Interpretation: Which position(s) are the logical values TRUE
located
The output will then be an integer vector denoting the positions in which there were missing values. Applying the concepts learned in Subsetting, we can exclude any values which are missing. For example,
Interpretation: For each element does this element NOT contain NA
Interpretation: Only keep the elements which DO NOT contain NA
If we only want to find out if there any NA
values, we can utilize the function anyNA()
The above command will output TRUE
if there are any NA
in the vector and FALSE
if there is not a single missing value
In conclusion, a common approach to check for missing data in R, we can use is.na()
or anyNA()
. If we want to know the position of the missing values, we should use is.na()
. However, if we are only concerned with whether there are any missing values or not, and not their position, then we can use anyNA()
Now, working with data frames we would like to verify if there are any missing observations throughout the entire dataset
#> StudentID Major GPA
#> 1 12345 math 3.8
#> 2 23456 <NA> 3.2
#> 3 23405 biology NA
When the function is.na()
is applied to a data frame, the output will be a matrix containing logical values. The logical values in the matrix will depend on whether there were any missing values or not in the data frame
#> StudentID Major GPA
#> [1,] FALSE FALSE FALSE
#> [2,] FALSE TRUE FALSE
#> [3,] FALSE FALSE TRUE
If we wanted to find out the position(s) of the missing values for each column we will utilize the apply()
. The basic syntax for apply()
is
apply(X, MARGIN, FUN)
x
: an array or matrix
MARGIN
: take a value or range between 1 and 2 to define where to apply the function
MARGIN=1
: the manipulation is performed on rows
MARGIN=2
: the manipulation is performed on columns
MARGIN=c(1,2)
: the manipulation is performed on rows and columns
FUN
: tells which function to apply, according to the specified MARGIN
#> $StudentID
#> integer(0)
#>
#> $Major
#> [1] 2
#>
#> $GPA
#> [1] 3
Interpretation: From each column MARGIN =2
, which values (FUN = which)
from student_dat are missing is.na(student_dat)
The output of using apply(...,MARGIN =2)
will be a list containing the row(s) in which missing values were found from each column
.
In our case there were no rows with missing data in the first column, the second row contained a missing value from the column Major and the third row contained a missing value from the column GPA